Spin Hamiltonian
Plot display
Spin Hamiltonian plots use fixed widths by default. Set the session default once:
from spinfinity import SpinSys, hamil, plotting
plotting.set_display_mode("responsive")
spin = SpinSys([0.5])
spin.B = [0.0, 0.0, 0.5]
hamil.calc_EigStates(spin, rebuildH=True)
output = hamil.plot_EigenMatrix(spin)
Override the setting for one call with show="fixed", show="responsive",
or show="no". With show=None (the default), the current global setting
is used. "no" still computes and returns the individual plot's results.
plot_All forwards the setting but retains its existing None return value.
All package plots use this setting. The Spin Hamiltonian fixed widths are 700 px for the eigenstate matrix and energy-versus-spin plot, and 600 px for the two Zeeman diagrams. All have a height of 450 px.
For documentation builds, SPINFINITY_PLOT_MODE=responsive can select the
initial setting before importing Spinfinity. An explicit call to
set_display_mode takes precedence. The setting does not modify the
default Plotly renderer.
API
SpinHamiltonian
Constructing and Analyzing the Spin Hamiltonian of the Spin System.
This module provides functionality for constructing and analyzing the quantum mechanical Hamiltonian of multi-spin systems. It handles the calculation of spin operators, eigenstate determination, and various interaction terms including Zeeman, exchange, dipolar, and anisotropy effects.
Functions:
| Name | Description |
|---|---|
calc_SpinOperators |
Compute the spin operator matrices for all spins in the given SpinSys object. |
calc_AngMomMatrices |
Calculate the angular momentum matrices for a given spin quantum number. |
calc_EigEnergies |
Solve the Spin Hamiltonian of the given |
calc_EigStates |
Construct the eigenstates of a spin system in Bra-Ket notation. |
build_Hamiltonian |
Build the Hamiltonian of the given |
add_Zeeman |
Add the Zeeman term to the Hamiltonian. |
add_TipField |
Add the tip magnetic field contribution to the Hamiltonian. |
add_ZeroField |
Build and add the anisotropy Hamiltonian. |
add_ExchangeInteraction |
Add the exchange interaction terms to the Hamiltonian. |
assign_ExchangeInteraction |
Helperfunction to add entries to Jvector from specified spin-spin couplings. |
add_HyperfineInteraction |
Add the hyperfine interaction terms to the spin system Hamiltonian. |
add_QuadrupoleInteraction |
Add the Quadrupole term to the Hamiltonian of the given |
add_ExchangeOffDiagonal |
Add off-diagonal exchange interaction terms to the Hamiltonian. |
calc_DipolarCoupling |
Return the dipolar coupling strength D0 for one spin pair, in meV. |
assign_DipolarCoupling |
Assign pairwise coupling strengths to DipoleVector. |
add_DipolarCoupling |
Add dipolar coupling interactions to the Hamiltonian. |
anticommutator |
Compute the anticommutator of two operators. |
stevens_operator |
Generate Stevens operator O_a^b for spin S. |
set_Stevens |
Set a Stevens operator coefficient for a given spin. |
plot_EigenMatrix |
Visualize the eigenstate matrix as a heatmap. |
plot_ZeemanDiagramm |
Plot the Zeeman diagram over a magnetic field range. |
plot_EnergyVsS |
Plot energy eigenvalues versus expectation values of spin operators. |
plot_TipZeemanDiagramm |
Plot the Zeeman diagram over a magnetic tip field range. |
plot_All |
Plot all relevant information for the spin system. |
Dependencies
- Uses
spinfinity.SpinSys.SpinSysclass to represent the spin system and its properties.
add_DipolarCoupling(spinsys)
Add dipolar interactions to H using DipoleVector, in meV.
Pair order is identical to Jvector. Zero entries disable the pair. Both distance and direction use AtomPositions * latticeLengthXY. The pair interaction is D0 * [Si.Sj - 3*(Si.rhat)*(Sj.rhat)].
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
Spin system containing DipoleVector, AtomPositions, latticeLengthXY, and spin operators Sx, Sy, Sz. The Hamiltonian H is modified in place. |
required |
Raises:
| Type | Description |
|---|---|
ValueError
|
If any pair of spins has zero physical separation, which would lead to a singularity in the dipolar interaction calculation. |
Source code in spinfinity\SpinHamiltonian.py
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add_ExchangeInteraction(spinsys)
Add the exchange interaction terms to the spin system Hamiltonian.
This function iterates over all unique pairs of spins in the given spin system
and adds the exchange interaction contributions to the Hamiltonian matrix H.
The exchange interaction is parameterized by the Jvector for each spin pair,
and the terms are added for the x, y, and z spin components.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing the Hamiltonian ( |
required |
Source code in spinfinity\SpinHamiltonian.py
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add_ExchangeOffDiagonal(spinsys)
Add off-diagonal exchange interaction terms to the spin system Hamiltonian.
This function computes and adds all pairwise spin-spin exchange interactions to the Hamiltonian matrix. It iterates through unique spin pairs (i < j) and adds six types of exchange coupling terms: Jxy, Jxz, Jyz, Jyx, Jzx, and Jzy.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing the Hamiltonian matrix H, spin operators (Sx, Sy, Sz), exchange coupling constants (Jxy, Jxz, Jyz, Jyx, Jzx, Jzy), and the total number of spins NSpins. |
required |
Source code in spinfinity\SpinHamiltonian.py
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add_HyperfineInteraction(spinsys)
Add the hyperfine interaction terms to the spin system Hamiltonian.
This function iterates over all unique pairs of spins in the given spin system
and adds the hyperfine interaction contributions to the Hamiltonian matrix H.
The hyperfine interaction is parameterized by the Avector for each spin pair,
and the terms are added for the x, y, and z spin components.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing the Hamiltonian ( |
required |
Source code in spinfinity\SpinHamiltonian.py
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add_QuadrupoleInteraction(spinsys)
Add the Quadrupole term to the Hamiltonian of the given SpinSys object.
The Quadrupole term describes the interaction between the electric field gradient and the nuclear spin.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing the Hamiltonian ( |
required |
Notes
The function updates the following attributes of spinsys:
spinsys.H: The Hamiltonian matrix is modified to include the Quadrupole term.
Source code in spinfinity\SpinHamiltonian.py
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add_TipField(spinsys)
Add the tip magnetic field contribution to the Hamiltonian for the readout spin.
Depending on the value of spinsys.tip, this function either adds
or subtracts the effect of the tip field on the readout spin in the
spin system Hamiltonian. The contribution is calculated for each
spatial component (x, y, z) using the corresponding spin operators
and the tip field vector.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing the Hamiltonian, spin operators, g-factor vector, Bohr magneton, tip field vector, and the index of the readout spin. |
required |
Source code in spinfinity\SpinHamiltonian.py
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add_Zeeman(spinsys)
Add the Zeeman term to the Hamiltonian of the given SpinSys object.
The Zeeman term describes the interaction between the magnetic moment of each spin and an external magnetic field.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing the Hamiltonian ( |
required |
Notes
The function updates the following attributes of spinsys:
spinsys.H: The Hamiltonian matrix is modified to include the Zeeman term.
Source code in spinfinity\SpinHamiltonian.py
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add_ZeroField(spinsys)
Build and add the anisotropy Hamiltonian for the spin system.
This function adds the anistropy part to the spin Hamiltonian using the parameters D and E or the Stevens operators.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing the Hamiltonian, number of spins, anisotropy parameters (Dvector and Evector), spin operator matrices, and a flag indicating whether Stevens operators are used. |
required |
Source code in spinfinity\SpinHamiltonian.py
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anticommutator(A, B)
Compute the anticommutator of two operators.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
A
|
array_like
|
First operator, typically a matrix or linear operator. |
required |
B
|
array_like
|
Second operator, typically a matrix or linear operator. |
required |
Returns:
| Type | Description |
|---|---|
ndarray
|
The anticommutator A @ B + B @ A. |
Source code in spinfinity\SpinHamiltonian.py
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assign_DipolarCoupling(spinsys, couplings)
Assign pairwise coupling strengths to DipoleVector.
This function takes a list of spin-spin couplings and updates the DipoleVector
attribute of the spinsys object accordingly. Each coupling is specified as a
tuple containing the indices of the two spins and their corresponding dipolar
coupling strength.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
Spin system containing DipoleVector. |
required |
couplings
|
iterable
|
Entries (i, j, D0), with D0 in meV or the string "calc". A value of zero disables the specified pair. |
required |
Raises:
| Type | Description |
|---|---|
ValueError
|
If a coupling is specified for a spin with itself (i == j) or if D0 is not a number or the string "calc". |
IndexError
|
If the specified spin indices are out of range for the given number of spins. |
Notes
Uses the same pair order as Jvector. Unspecified pairs remain unchanged. "calc" is evaluated immediately; repeat the assignment after changing positions, lattice constants or g-factors.
Source code in spinfinity\SpinHamiltonian.py
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assign_ExchangeInteraction(spinsys, couplings)
Helperfunction to add entries to Jvector from specified spin-spin couplings.
This function takes a list of spin-spin couplings and updates the Jvector
attribute of the spinsys object accordingly. Each coupling is specified as a
tuple containing the indices of the two spins and their corresponding exchange
interaction vector.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing the Hamiltonian ( |
required |
couplings
|
iterable
|
Each entry should have the form
where i and j are zero-based spin indices. |
required |
Raises:
| Type | Description |
|---|---|
ValueError
|
If a coupling is specified for a spin with itself (i == j) or if the coupling vector does not have the correct shape. |
IndexError
|
If the specified spin indices are out of range for the given number of spins. |
Source code in spinfinity\SpinHamiltonian.py
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build_Hamiltonian(spinsys)
Build the Hamiltonian of the given SpinSys object.
This function sequentially adds various interaction terms to the Hamiltonian, including Zeeman, tip field, zero-field splitting, exchange interaction, and dipolar coupling.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing all relevant parameters and matrices. The results of the calculation are stored as attributes of this object. |
required |
Notes
The function updates the following attributes of spinsys:
- spinsys.H: Spin Hamiltonian.
Source code in spinfinity\SpinHamiltonian.py
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calc_AngMomMatrices(s)
Calculate the angular momentum matrices for a given spin quantum number s.
The function constructs the matrices in the basis of eigenstates of S_z, with m ranging from -s to +s. The raising (S_p) and lowering (S_m) operators are used to construct S_x and S_y.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
s
|
int or float
|
Spin quantum number (can be integer or half-integer). |
required |
Returns:
| Name | Type | Description |
|---|---|---|
S_x |
ndarray
|
The matrix representation of the S_x (x-component of spin) operator. |
S_y |
ndarray
|
The matrix representation of the S_y (y-component of spin) operator. |
S_z |
ndarray
|
The matrix representation of the S_z (z-component of spin) operator. |
Source code in spinfinity\SpinHamiltonian.py
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calc_DipolarCoupling(spinsys, i, j)
Return the dipolar coupling strength D0 for one spin pair, in meV.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
Spin system containing positions, lattice constants and g-factors. AtomPositions are lattice coordinates; latticeLengthXY is in nm. |
required |
i
|
int
|
Distinct, zero-based spin indices. |
required |
j
|
int
|
Distinct, zero-based spin indices. |
required |
Returns:
| Name | Type | Description |
|---|---|---|
D0 |
float
|
Dipolar coupling strength in meV. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If the specified spin indices are the same (i == j) or if the physical separation between the spins is zero. |
IndexError
|
If the specified spin indices are out of range for the given number of spins. |
Source code in spinfinity\SpinHamiltonian.py
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calc_EigEnergies(spinsys, rebuildH=False)
Solve the Spin Hamiltonian of the given SpinSys object.
This function diagonalizes the Hamiltonian and sorts the eigenenergies. and updates the spin system with the results.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing all relevant parameters and matrices. The results of the calculation are stored as attributes of this object. |
required |
rebuildH
|
bool
|
If True, the Hamiltonian will be rebuilt before solving. Default is False. |
False
|
Notes
The function updates the following attributes of spinsys:
spinsys.H: Spin Hamiltonian.spinsys.E_sort: Sorted eigenenergies of the Hamiltonian.spinsys.E_All: Eigenenergies shifted such that the lowest energy is zero.spinsys.E_All_inGHz: Eigenenergies converted to GHz.spinsys.eigVectors: Corresponding eigenvectors of the Hamiltonian.
Source code in spinfinity\SpinHamiltonian.py
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calc_EigStates(spinsys, rebuildH=False)
Construct the eigenstates of of the given SpinSys object in Bra-Ket notation.
This function generates the basis states, sorts the eigenvectors by their absolute values, and constructs human-readable representations of the eigenstates, including their energies and dominant basis state contributions.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing the Hamiltonian, eigenvectors, eigenvalues, and other relevant properties. The function updates this object with additional attributes representing the eigenstates in various notations. |
required |
rebuildH
|
bool
|
If True, the Hamiltonian will be rebuilt before calculating the eigenstates. Default is False. |
False
|
Notes
The function updates the following attributes of spinsys:
- states: Full eigenstate expressions in Bra-Ket notation with energies.
- statesOnlyLHS: Left-hand side of the eigenstate expressions
(state label and energy).
- statesWithoutE : State labels without energy information.
- statesOnlyRHS : Right-hand side of the eigenstate expressions, showing only the
top two basis state contributions.
- basisStates : Basis states in Bra-Ket notation.
Source code in spinfinity\SpinHamiltonian.py
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calc_SpinOperators(spinsys)
Compute the spin operator matrices for all spins of the given SpinSys object.
For each spin, the corresponding Sx, Sy, and Sz matrices are
constructed using Kronecker products, such that each operator acts
on the correct subspace of the total Hilbert space. The results are
stored in the spinsys.Sx, spinsys.Sy, and spinsys.Sz
attributes.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
An instance of the SpinSys class containing information about the spin system,
including the number of spins ( |
required |
Notes
The function updates the following attributes of spinsys:
Sx: A 3D array whereSx[i]is the Sx operator for the i-th spin.Sy: A 3D array whereSy[i]is the Sy operator for the i-th spin.Sz: A 3D array whereSz[i]is the Sz operator for the i-th spin.
Source code in spinfinity\SpinHamiltonian.py
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plot_All(spinsys, type='z', energyscale='meV', show=None)
Plot all relevant information for the spin system.
Display the eigenstate matrix, energy versus spin expectation values, and Zeeman diagram.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing Hamiltonian, eigenvectors, and energies. |
required |
type
|
str
|
The spin operator to use for the expectation value ('x', 'y', or 'z'). Default is 'z'. |
'z'
|
energyscale
|
str
|
The energy scale to use for the plots ('meV' or 'GHz'). Default is 'meV'. |
'meV'
|
show
|
(fixed, responsive, no)
|
Display mode forwarded to all three plots. |
"fixed"
|
Source code in spinfinity\SpinHamiltonian.py
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plot_EigenMatrix(spinsys, plot_type='p', show=None)
Visualize the eigenstate matrix of the spin system as a heatmap.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing eigenvectors, basis states, and other relevant properties. |
required |
plot_type
|
str
|
Type of plot to generate: - 'p': Probability (default), displays the probability matrix using the 'hot' colormap. - 'a': Amplitude, displays the amplitude matrix using the 'coolwarm' colormap. |
'p'
|
show
|
(fixed, responsive, no)
|
Display mode. |
"fixed"
|
Returns:
| Name | Type | Description |
|---|---|---|
return_dict |
dict
|
|
A dictionary containing:
|
|
|
- 'fig': plotly.graph_objects.Figure
|
The Plotly figure containing the eigenstate matrix. |
|
- 'm': numpy.ndarray
|
The matrix used for the heatmap visualization. Containing the projection values according to p/a. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If |
Source code in spinfinity\SpinHamiltonian.py
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plot_EnergyVsS(spinsys, type='z', energyscale='meV', show=None)
Plot the energy eigenvalues versus the expectation values of Sx, Sy, or Sz.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing Hamiltonian, eigenvectors, and energies. |
required |
type
|
str
|
The spin operator to use for the expectation value ('x', 'y', or 'z'). Default is 'z'. |
'z'
|
energyscale
|
(meV, GHz)
|
Unit for the plotted energies. Default is |
"meV"
|
show
|
(fixed, responsive, no)
|
Display mode. |
"fixed"
|
Returns:
| Name | Type | Description |
|---|---|---|
return_dict |
dict
|
A dictionary containing: - 'fig': plotly.graph_objects.Figure The Plotly figure containing energies versus spin expectation values. - 'E_array': numpy.ndarray The array of energy eigenvalues. - 'S_elements': numpy.ndarray The array of expectation values of the selected spin operator. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If |
Source code in spinfinity\SpinHamiltonian.py
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plot_TipZeemanDiagramm(spinsys, BTip_array, Baxis='z', energyscale='meV', show=None)
Plot the Zeeman diagram over a specified magnetic tip field values.
This function sweeps the specified component of the tip field (BTip) through a given range and calculates the corresponding energy eigenvalues for each tip field value. The resulting Zeeman diagram is plotted using Plotly.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
Spin system containing the tip field vector, Hamiltonian, and
energy levels ( |
required |
BTip_array
|
ndarray
|
An array of tip field values to sweep through. |
required |
Baxis
|
(x, y, z)
|
Which component of |
"x"
|
energyscale
|
(meV, GHz)
|
Unit for the plotted energies. Default is |
"meV"
|
show
|
(fixed, responsive, no)
|
Display mode. |
"fixed"
|
Returns:
| Name | Type | Description |
|---|---|---|
return_dict |
dict
|
A dictionary containing:
- |
Notes
- The function restores the original
spinsys.BTipafter the sweep. - Energies are recalculated for each tip field value via
hamil.calc_EigEnergies.
Source code in spinfinity\SpinHamiltonian.py
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plot_ZeemanDiagramm(spinsys, B_array=None, energyscale='meV', show=None)
Plot the Zeeman diagram over a specified magnetic field range.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object containing all relevant parameters and methods, including the magnetic field vector and energy levels. |
required |
B_array
|
ndarray
|
An array of magnetic field values to use for the sweep. If None, a default range from 0 to 1 Tesla will be used with 200 points. |
None
|
energyscale
|
(meV, GHz)
|
Unit for the plotted energies. Default is |
"meV"
|
show
|
(fixed, responsive, no)
|
Display mode. |
"fixed"
|
Returns:
| Name | Type | Description |
|---|---|---|
return_dict |
dict
|
A dictionary containing: - 'fig': plotly.graph_objects.Figure The Plotly figure containing the Zeeman diagram. - 'B_array': numpy.ndarray The array of magnetic field values used in the sweep. - 'E_array': numpy.ndarray The array of energy eigenvalues corresponding to each magnetic field value. |
Source code in spinfinity\SpinHamiltonian.py
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set_Stevens(spinsys, i_spin, k, q, value)
Set a Stevens operator coefficient for a given spin.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
spinsys
|
SpinSys
|
The spin system object. |
required |
i_spin
|
int
|
Index of the spin in the spin system. |
required |
k
|
int
|
Degree of the Stevens operator (e.g., 2, 4, 6). |
required |
q
|
int
|
Order of the Stevens operator (-q ≤ k ≤ q). |
required |
value
|
float or complex
|
Coefficient for the Stevens operator. |
required |
Raises:
| Type | Description |
|---|---|
IndexError
|
If |
TypeError
|
If |
Source code in spinfinity\SpinHamiltonian.py
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stevens_operator(S, k, q, return_latex=False)
Generate Stevens operator O_a^b for spin S.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
S
|
float
|
Spin quantum number (e.g. 1, 3/2, 2, etc.) |
required |
k
|
int
|
Rank of the Stevens operator (2, 4, 6) |
required |
q
|
int
|
Component index (from -q to +q) |
required |
return_latex
|
bool
|
Whether to return a LaTeX string for display purposes |
False
|
Returns:
| Name | Type | Description |
|---|---|---|
Oab |
ndarray
|
Matrix representation of the Stevens operator |
latex_str |
str(optional)
|
LaTeX representation |
Raises:
| Type | Description |
|---|---|
ValueError
|
If k is not in {2, 4, 6} or if q is out of the valid range for the given k. |
Source code in spinfinity\SpinHamiltonian.py
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See the shared display settings for custom figures and notebook display behavior.